Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL5A1P20908 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A1P20908 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A1P20908 HCG4B-203ENST00000450128 991 ntBASIC17.13■□□□□ 0.33
COL5A1P20908 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A1P20908 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A1P20908 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A1P20908 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 ESPNP-201ENST00000270691 2015 ntBASIC17.13■□□□□ 0.33
COL5A1P20908 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A1P20908 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
COL5A1P20908 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A1P20908 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL5A1P20908 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 CYMP-203ENST00000474680 1263 ntBASIC17.12■□□□□ 0.33
COL5A1P20908 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL5A1P20908 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.12■□□□□ 0.33
COL5A1P20908 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
COL5A1P20908 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.12■□□□□ 0.33
COL5A1P20908 AC008667.4-201ENST00000607370 168 ntBASIC17.12■□□□□ 0.33
COL5A1P20908 C20orf181-201ENST00000623918 480 ntBASIC17.12■□□□□ 0.33
COL5A1P20908 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 AC073592.3-201ENST00000625118 1834 ntBASIC17.12■□□□□ 0.33
COL5A1P20908 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A1P20908 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.12■□□□□ 0.33
COL5A1P20908 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 AC018845.2-201ENST00000568326 409 ntBASIC17.12■□□□□ 0.33
COL5A1P20908 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 AC004706.3-202ENST00000621574 984 ntBASIC17.12■□□□□ 0.33
COL5A1P20908 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A1P20908 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A1P20908 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
COL5A1P20908 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
COL5A1P20908 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
COL5A1P20908 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A1P20908 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A1P20908 AC126763.1-201ENST00000552015 2118 ntBASIC17.11■□□□□ 0.33
COL5A1P20908 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL5A1P20908 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL5A1P20908 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A1P20908 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL5A1P20908 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A1P20908 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.11■□□□□ 0.33
COL5A1P20908 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.11■□□□□ 0.33
COL5A1P20908 AC027612.4-201ENST00000605371 583 ntBASIC17.11■□□□□ 0.33
COL5A1P20908 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 AC073592.5-201ENST00000624854 528 ntBASIC17.11■□□□□ 0.33
COL5A1P20908 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL5A1P20908 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A1P20908 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms