Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC139887.4-201ENST00000607877 719 ntBASIC20.7■□□□□ 0.9
LIG1P18858 AC010331.1-201ENST00000611423 582 ntBASIC20.7■□□□□ 0.9
LIG1P18858 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.7■□□□□ 0.9
LIG1P18858 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIG1P18858 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG1P18858 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
LIG1P18858 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
LIG1P18858 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.7■□□□□ 0.9
LIG1P18858 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG1P18858 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG1P18858 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIG1P18858 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG1P18858 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LIG1P18858 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 AC009947.2-201ENST00000444014 672 ntBASIC20.69■□□□□ 0.9
LIG1P18858 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
LIG1P18858 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LIG1P18858 AC006011.2-201ENST00000621313 1158 ntBASIC20.69■□□□□ 0.9
LIG1P18858 AL138966.2-201ENST00000621997 464 ntBASIC20.69■□□□□ 0.9
LIG1P18858 AL023973.1-201ENST00000624619 620 ntBASIC20.69■□□□□ 0.9
LIG1P18858 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG1P18858 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG1P18858 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG1P18858 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LIG1P18858 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG1P18858 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG1P18858 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.68■□□□□ 0.9
LIG1P18858 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LIG1P18858 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIG1P18858 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.68■□□□□ 0.9
LIG1P18858 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.68■□□□□ 0.9
LIG1P18858 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.68■□□□□ 0.9
LIG1P18858 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 CR769767.2-201ENST00000622735 460 ntBASIC20.68■□□□□ 0.9
LIG1P18858 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
LIG1P18858 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIG1P18858 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIG1P18858 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIG1P18858 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 AL024508.2-201ENST00000607749 1894 ntBASIC20.68■□□□□ 0.9
LIG1P18858 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
LIG1P18858 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
LIG1P18858 HOXB1-202ENST00000577092 1414 ntBASIC20.68■□□□□ 0.9
LIG1P18858 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.68■□□□□ 0.9
LIG1P18858 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG1P18858 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.67■□□□□ 0.9
LIG1P18858 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.67■□□□□ 0.9
LIG1P18858 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LIG1P18858 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIG1P18858 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 AK4P3-201ENST00000418260 669 ntBASIC20.67■□□□□ 0.9
LIG1P18858 KRT18P23-201ENST00000435622 1283 ntBASIC20.67■□□□□ 0.9
LIG1P18858 BX664615.1-201ENST00000443558 458 ntBASIC20.67■□□□□ 0.9
LIG1P18858 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.67■□□□□ 0.9
LIG1P18858 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.67■□□□□ 0.9
LIG1P18858 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
LIG1P18858 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.67■□□□□ 0.9
LIG1P18858 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LIG1P18858 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.67■□□□□ 0.9
LIG1P18858 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LIG1P18858 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG1P18858 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
LIG1P18858 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms