Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 AC021087.4-201ENST00000563761 564 ntBASIC21.12■□□□□ 0.97
HLA-DOAP06340 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 MIR7706-201ENST00000613747 67 ntBASIC21.12■□□□□ 0.97
HLA-DOAP06340 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 FAM215A-202ENST00000632077 792 ntBASIC21.12■□□□□ 0.97
HLA-DOAP06340 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.12■□□□□ 0.97
HLA-DOAP06340 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DOAP06340 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 AL096828.2-201ENST00000567259 1965 ntBASIC21.11■□□□□ 0.97
HLA-DOAP06340 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HLA-DOAP06340 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
HLA-DOAP06340 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC010460.3-201ENST00000511359 1579 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 HNRNPDP1-201ENST00000439535 754 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC122714.2-201ENST00000502787 707 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC139887.3-201ENST00000568585 713 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AL049840.3-201ENST00000602669 611 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AP000867.4-201ENST00000641616 219 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HLA-DOAP06340 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
HLA-DOAP06340 AC243591.1-201ENST00000452967 1364 ntBASIC21.1■□□□□ 0.97
HLA-DOAP06340 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DOAP06340 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC21.09■□□□□ 0.97
HLA-DOAP06340 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
HLA-DOAP06340 AF228730.7-201ENST00000641842 219 ntBASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms