Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
APOBP04114 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC11.12□□□□□ -0.63
APOBP04114 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 DAD1-205ENST00000543337 501 ntTSL 3 BASIC11.12□□□□□ -0.63
APOBP04114 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 AQP6-205ENST00000618286 829 ntTSL 5 BASIC11.12□□□□□ -0.63
APOBP04114 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 AC122714.2-201ENST00000502787 707 ntBASIC11.12□□□□□ -0.63
APOBP04114 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
APOBP04114 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 RPL30-202ENST00000396070 440 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 TSPY16P-201ENST00000449843 468 ntBASIC11.12□□□□□ -0.63
APOBP04114 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 AC004790.2-201ENST00000623588 572 ntBASIC11.12□□□□□ -0.63
APOBP04114 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 AC063926.2-201ENST00000623766 1308 ntBASIC11.12□□□□□ -0.63
APOBP04114 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
APOBP04114 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC11.12□□□□□ -0.63
APOBP04114 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC11.12□□□□□ -0.63
APOBP04114 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC11.11□□□□□ -0.63
APOBP04114 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 AC008667.4-201ENST00000607370 168 ntBASIC11.11□□□□□ -0.63
APOBP04114 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 AL805961.1-202ENST00000641562 540 ntBASIC11.11□□□□□ -0.63
APOBP04114 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 AC093484.2-201ENST00000580996 2166 ntBASIC11.11□□□□□ -0.63
APOBP04114 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC11.11□□□□□ -0.63
APOBP04114 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 OR8S1-201ENST00000310194 1080 ntBASIC11.11□□□□□ -0.63
APOBP04114 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
APOBP04114 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC11.11□□□□□ -0.63
APOBP04114 AC068137.2-201ENST00000605408 478 ntBASIC11.11□□□□□ -0.63
APOBP04114 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
APOBP04114 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC11.11□□□□□ -0.63
APOBP04114 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC11.11□□□□□ -0.63
APOBP04114 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
APOBP04114 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC11.11□□□□□ -0.63
APOBP04114 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
APOBP04114 MIR943-201ENST00000401286 94 ntBASIC11.11□□□□□ -0.63
APOBP04114 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC11.11□□□□□ -0.63
APOBP04114 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC11.11□□□□□ -0.63
APOBP04114 SMN2-210ENST00000511812 867 ntTSL 2 BASIC11.11□□□□□ -0.63
APOBP04114 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
APOBP04114 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
APOBP04114 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
APOBP04114 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
APOBP04114 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
APOBP04114 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC11.1□□□□□ -0.63
APOBP04114 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
APOBP04114 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
APOBP04114 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC11.1□□□□□ -0.63
APOBP04114 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
APOBP04114 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
APOBP04114 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC11.1□□□□□ -0.63
APOBP04114 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms