Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 AC067852.2-201ENST00000590513 2313 ntBASIC20.92■□□□□ 0.94
CDKL5O76039 AL671277.2-201ENST00000458060 996 ntBASIC20.92■□□□□ 0.94
CDKL5O76039 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.92■□□□□ 0.94
CDKL5O76039 VENTXP5-201ENST00000523979 775 ntBASIC20.92■□□□□ 0.94
CDKL5O76039 GPR32P1-201ENST00000601788 811 ntBASIC20.92■□□□□ 0.94
CDKL5O76039 AC116407.2-201ENST00000613639 860 ntBASIC20.92■□□□□ 0.94
CDKL5O76039 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.92■□□□□ 0.94
CDKL5O76039 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CDKL5O76039 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 AC006116.8-202ENST00000587620 1550 ntBASIC20.92■□□□□ 0.94
CDKL5O76039 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.92■□□□□ 0.94
CDKL5O76039 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.92■□□□□ 0.94
CDKL5O76039 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDKL5O76039 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.91■□□□□ 0.94
CDKL5O76039 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CDKL5O76039 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.91■□□□□ 0.94
CDKL5O76039 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CDKL5O76039 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.91■□□□□ 0.94
CDKL5O76039 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.91■□□□□ 0.94
CDKL5O76039 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.91■□□□□ 0.94
CDKL5O76039 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDKL5O76039 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 AC100803.2-201ENST00000562459 1963 ntBASIC20.9■□□□□ 0.94
CDKL5O76039 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CDKL5O76039 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.9■□□□□ 0.94
CDKL5O76039 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.9■□□□□ 0.94
CDKL5O76039 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CDKL5O76039 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.9■□□□□ 0.94
CDKL5O76039 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.9■□□□□ 0.94
CDKL5O76039 AC083849.1-201ENST00000615227 514 ntBASIC20.9■□□□□ 0.94
CDKL5O76039 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.9■□□□□ 0.94
CDKL5O76039 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CDKL5O76039 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.9■□□□□ 0.94
CDKL5O76039 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDKL5O76039 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.9■□□□□ 0.94
CDKL5O76039 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDKL5O76039 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDKL5O76039 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.89■□□□□ 0.94
CDKL5O76039 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDKL5O76039 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
CDKL5O76039 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDKL5O76039 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CDKL5O76039 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 AL353692.3-201ENST00000407031 1396 ntBASIC20.89■□□□□ 0.93
CDKL5O76039 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.89■□□□□ 0.93
CDKL5O76039 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 KRT18P21-201ENST00000515767 1272 ntBASIC20.89■□□□□ 0.93
CDKL5O76039 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.89■□□□□ 0.93
CDKL5O76039 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.89■□□□□ 0.93
CDKL5O76039 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.89■□□□□ 0.93
CDKL5O76039 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.89■□□□□ 0.93
CDKL5O76039 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDKL5O76039 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
CDKL5O76039 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.88■□□□□ 0.93
CDKL5O76039 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CDKL5O76039 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDKL5O76039 AC012317.2-201ENST00000623305 2251 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms