Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGN4O00479 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGN4O00479 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HMGN4O00479 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGN4O00479 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.72■□□□□ 0.27
HMGN4O00479 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGN4O00479 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 AL136038.4-201ENST00000603606 1261 ntBASIC16.72■□□□□ 0.27
HMGN4O00479 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 AC141586.5-201ENST00000624546 2050 ntBASIC16.72■□□□□ 0.27
HMGN4O00479 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGN4O00479 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.72■□□□□ 0.27
HMGN4O00479 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGN4O00479 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGN4O00479 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGN4O00479 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGN4O00479 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 HTR7P1-202ENST00000624664 4411 ntBASIC16.71■□□□□ 0.27
HMGN4O00479 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 SPDYE15P-201ENST00000424157 909 ntBASIC16.71■□□□□ 0.27
HMGN4O00479 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGN4O00479 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGN4O00479 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGN4O00479 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGN4O00479 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 AC133561.5-201ENST00000635547 218 ntBASIC16.71■□□□□ 0.27
HMGN4O00479 AC097493.4-201ENST00000641197 219 ntBASIC16.71■□□□□ 0.27
HMGN4O00479 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HMGN4O00479 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGN4O00479 AC108860.2-201ENST00000562760 2183 ntBASIC16.71■□□□□ 0.27
HMGN4O00479 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.71■□□□□ 0.26
HMGN4O00479 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGN4O00479 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGN4O00479 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGN4O00479 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGN4O00479 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGN4O00479 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGN4O00479 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 AC133963.1-201ENST00000504166 1679 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
HMGN4O00479 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGN4O00479 AC113347.1-201ENST00000413321 391 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGN4O00479 HLA-F-220ENST00000434407 884 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 KRT18P65-201ENST00000439811 1286 ntBASIC16.7■□□□□ 0.26
HMGN4O00479 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGN4O00479 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGN4O00479 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGN4O00479 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms