Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 AC008761.3-201ENST00000624803 892 ntBASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 AC010507.1-201ENST00000633895 436 ntBASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 AL358472.5-202ENST00000641448 1267 ntBASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 AC125437.2-201ENST00000625180 2167 ntBASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A6A6NMZ7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 TERF1P3-201ENST00000505638 1227 ntBASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 IGHV3-71-201ENST00000523324 359 ntBASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 KRT18P65-201ENST00000439811 1286 ntBASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 AC068137.2-201ENST00000605408 478 ntBASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 AL589182.2-201ENST00000619332 1049 ntBASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
COL6A6A6NMZ7 KRT8P47-201ENST00000604727 1398 ntBASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AC005082.1-201ENST00000413042 2259 ntBASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AC245100.3-201ENST00000441281 285 ntBASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AL606495.2-201ENST00000605867 535 ntBASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 AC091812.2-201ENST00000619081 385 ntBASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A6A6NMZ7 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms