Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4S1Q9Y587 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 MYC-209ENST00000641252 345 ntBASIC17.03■□□□□ 0.32
AP4S1Q9Y587 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4S1Q9Y587 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 PCDHA14-201ENST00000506751 2298 ntBASIC17.02■□□□□ 0.32
AP4S1Q9Y587 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP4S1Q9Y587 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 AC034236.2-201ENST00000606662 1610 ntBASIC17.02■□□□□ 0.31
AP4S1Q9Y587 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 AGGF1P2-201ENST00000426656 2106 ntBASIC17.02■□□□□ 0.31
AP4S1Q9Y587 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
AP4S1Q9Y587 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 CICP6-201ENST00000457191 2729 ntBASIC17.01■□□□□ 0.31
AP4S1Q9Y587 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4S1Q9Y587 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms