Protein–RNA interactions for Protein: Q9UFD9

RIMBP3, RIMS-binding protein 3A, humanhuman

Predictions only

Length 1,639 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIMBP3Q9UFD9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 AL162274.1-201ENST00000617191 1098 ntBASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 AC138969.3-201ENST00000546612 1459 ntBASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 AC138932.2-201ENST00000548268 1459 ntBASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 AC126755.4-201ENST00000549796 1459 ntBASIC28.32■■■□□ 2.12
RIMBP3Q9UFD9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 NKTR-203ENST00000442970 646 ntTSL 2 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC28.31■■■□□ 2.12
RIMBP3Q9UFD9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 SPDYE7P-202ENST00000420373 878 ntBASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 MIR6080-201ENST00000617359 66 ntBASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RIMBP3Q9UFD9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 TP53TG3HP-202ENST00000569755 579 ntBASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 TBC1D3P5-201ENST00000579401 1545 ntBASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 AC092933.1-201ENST00000393644 945 ntBASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 HAUS4P1-201ENST00000406739 1145 ntBASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 RETN-203ENST00000629642 400 ntTSL 5 BASIC28.29■■■□□ 2.12
RIMBP3Q9UFD9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 AC099343.3-201ENST00000605834 2503 ntBASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 AL513480.1-201ENST00000451731 511 ntBASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 AC140912.1-201ENST00000577171 1054 ntBASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 AC100757.3-201ENST00000622361 1406 ntBASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC28.28■■■□□ 2.12
RIMBP3Q9UFD9 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 RPF1-202ENST00000370656 724 ntTSL 2 BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 ACTL9-202ENST00000612068 1252 ntBASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RIMBP3Q9UFD9 AC022144.1-201ENST00000602255 1580 ntBASIC28.26■■■□□ 2.12
RIMBP3Q9UFD9 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
RIMBP3Q9UFD9 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC28.26■■■□□ 2.11
RIMBP3Q9UFD9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC28.26■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms