Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 ESRRAP1-201ENST00000400596 1257 ntBASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 MFAP1P1-201ENST00000442257 1255 ntBASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 DGCR10-201ENST00000609839 495 ntBASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC28BQ9BUN5 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 AL024508.2-201ENST00000607749 1894 ntBASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC28BQ9BUN5 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 KRT18P23-201ENST00000435622 1283 ntBASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 MIR4674-201ENST00000582457 87 ntBASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC28BQ9BUN5 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 CICP6-201ENST00000457191 2729 ntBASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms