Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.68■□□□□ 0.58
ATG4AQ8WYN0 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 AC009053.2-201ENST00000563701 2365 ntBASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATG4AQ8WYN0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 DUTP2-201ENST00000519164 463 ntBASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 LINC00167-201ENST00000530583 1419 ntBASIC18.66■□□□□ 0.58
ATG4AQ8WYN0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 AC099398.1-201ENST00000567919 2776 ntBASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4AQ8WYN0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms