Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
USP39Q53GS9 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.27■□□□□ 0.52
USP39Q53GS9 MIR1233-2-201ENST00000408138 82 ntBASIC18.27■□□□□ 0.52
USP39Q53GS9 MIR1233-1-201ENST00000408722 82 ntBASIC18.27■□□□□ 0.52
USP39Q53GS9 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 SCARNA2-201ENST00000458748 420 ntBASIC18.27■□□□□ 0.52
USP39Q53GS9 RPL13AP23-201ENST00000480739 586 ntBASIC18.27■□□□□ 0.52
USP39Q53GS9 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.27■□□□□ 0.52
USP39Q53GS9 AC139887.3-201ENST00000568585 713 ntBASIC18.27■□□□□ 0.52
USP39Q53GS9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.27■□□□□ 0.52
USP39Q53GS9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.27■□□□□ 0.52
USP39Q53GS9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.27■□□□□ 0.52
USP39Q53GS9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.27■□□□□ 0.52
USP39Q53GS9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.27■□□□□ 0.52
USP39Q53GS9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.27■□□□□ 0.52
USP39Q53GS9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP39Q53GS9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.27■□□□□ 0.51
USP39Q53GS9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP39Q53GS9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
USP39Q53GS9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP39Q53GS9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP39Q53GS9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.26■□□□□ 0.51
USP39Q53GS9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USP39Q53GS9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USP39Q53GS9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 AC009113.1-201ENST00000570267 2443 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 RBM17P3-201ENST00000417687 1192 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 AC113404.2-201ENST00000507884 177 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 POLD2P1-201ENST00000511220 997 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 KRT18P41-201ENST00000518924 1277 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.26■□□□□ 0.51
USP39Q53GS9 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.26■□□□□ 0.51
USP39Q53GS9 AL355877.3-201ENST00000622820 899 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 AC243591.1-201ENST00000452967 1364 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 AC104581.1-202ENST00000635932 2618 ntBASIC18.26■□□□□ 0.51
USP39Q53GS9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.26■□□□□ 0.51
USP39Q53GS9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.26■□□□□ 0.51
USP39Q53GS9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP39Q53GS9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
USP39Q53GS9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.25■□□□□ 0.51
USP39Q53GS9 WIZP1-201ENST00000531444 2299 ntBASIC18.25■□□□□ 0.51
USP39Q53GS9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.25■□□□□ 0.51
USP39Q53GS9 HEIH-201ENST00000623091 1652 ntBASIC18.25■□□□□ 0.51
USP39Q53GS9 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.25■□□□□ 0.51
USP39Q53GS9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
USP39Q53GS9 RCN1P2-201ENST00000398357 915 ntBASIC18.25■□□□□ 0.51
USP39Q53GS9 MIR940-201ENST00000401276 94 ntBASIC18.25■□□□□ 0.51
USP39Q53GS9 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.25■□□□□ 0.51
USP39Q53GS9 AC018712.1-201ENST00000455767 687 ntBASIC18.25■□□□□ 0.51
USP39Q53GS9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
USP39Q53GS9 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.25■□□□□ 0.51
USP39Q53GS9 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
USP39Q53GS9 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.25■□□□□ 0.51
USP39Q53GS9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.25■□□□□ 0.51
USP39Q53GS9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP39Q53GS9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
USP39Q53GS9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms