Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ATP5G1P1-201ENST00000448724 379 ntBASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 GCSHP2-201ENST00000560971 527 ntBASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 AC133561.5-201ENST00000635547 218 ntBASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 PVRIG2P-201ENST00000435460 978 ntBASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 AC008687.5-201ENST00000593746 558 ntBASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
CCDC40Q4G0X9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 AC012317.2-201ENST00000623305 2251 ntBASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC40Q4G0X9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 AC034232.1-201ENST00000506026 1064 ntBASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 AC010203.1-204ENST00000548782 407 ntBASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 AC140113.3-201ENST00000605663 199 ntBASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
CCDC40Q4G0X9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 KRT18P55-202ENST00000578578 1546 ntBASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC40Q4G0X9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms