Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 AC015911.4-201ENST00000588022 1070 ntBASIC18.96■□□□□ 0.63
CHD9Q3L8U1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 AC004790.2-201ENST00000623588 572 ntBASIC18.95■□□□□ 0.62
CHD9Q3L8U1 AL161938.1-201ENST00000569833 2180 ntBASIC18.95■□□□□ 0.62
CHD9Q3L8U1 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHD9Q3L8U1 AC105339.1-204ENST00000636249 355 ntBASIC18.95■□□□□ 0.62
CHD9Q3L8U1 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 AL805961.1-202ENST00000641562 540 ntBASIC18.94■□□□□ 0.62
CHD9Q3L8U1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHD9Q3L8U1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 MYLKP1-201ENST00000509077 1580 ntBASIC18.93■□□□□ 0.62
CHD9Q3L8U1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 SIGLEC30P-201ENST00000455569 941 ntBASIC18.93■□□□□ 0.62
CHD9Q3L8U1 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 AC023141.5-201ENST00000458585 616 ntBASIC18.93■□□□□ 0.62
CHD9Q3L8U1 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 AC051619.7-201ENST00000568314 623 ntBASIC18.93■□□□□ 0.62
CHD9Q3L8U1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.93■□□□□ 0.62
CHD9Q3L8U1 LINC00628-201ENST00000628516 1289 ntBASIC18.93■□□□□ 0.62
CHD9Q3L8U1 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHD9Q3L8U1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 MRPL20P1-201ENST00000400819 433 ntBASIC18.92■□□□□ 0.62
CHD9Q3L8U1 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 SIRPAP1-201ENST00000448467 1770 ntBASIC18.92■□□□□ 0.62
CHD9Q3L8U1 CRYGEP-201ENST00000412192 528 ntBASIC18.92■□□□□ 0.62
CHD9Q3L8U1 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 AP005018.1-201ENST00000525475 301 ntBASIC18.92■□□□□ 0.62
CHD9Q3L8U1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CHD9Q3L8U1 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 AC093214.1-201ENST00000511688 1107 ntBASIC18.91■□□□□ 0.62
CHD9Q3L8U1 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHD9Q3L8U1 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms