Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 KRT18P32-201ENST00000424695 1287 ntBASIC12.9□□□□□ -0.34
PRKDCP78527 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.9□□□□□ -0.34
PRKDCP78527 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.9□□□□□ -0.34
PRKDCP78527 AL390754.1-201ENST00000619088 582 ntBASIC12.9□□□□□ -0.34
PRKDCP78527 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 LINC00565-201ENST00000562710 2331 ntBASIC12.9□□□□□ -0.34
PRKDCP78527 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC12.9□□□□□ -0.34
PRKDCP78527 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.9□□□□□ -0.34
PRKDCP78527 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
PRKDCP78527 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
PRKDCP78527 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC12.9□□□□□ -0.34
PRKDCP78527 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC12.9□□□□□ -0.34
PRKDCP78527 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
PRKDCP78527 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 KRT18P65-201ENST00000439811 1286 ntBASIC12.9□□□□□ -0.34
PRKDCP78527 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
PRKDCP78527 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.35
PRKDCP78527 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
PRKDCP78527 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
PRKDCP78527 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.9□□□□□ -0.35
PRKDCP78527 AC092580.3-201ENST00000430932 139 ntBASIC12.9□□□□□ -0.35
PRKDCP78527 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
PRKDCP78527 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.9□□□□□ -0.35
PRKDCP78527 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
PRKDCP78527 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.9□□□□□ -0.35
PRKDCP78527 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.9□□□□□ -0.35
PRKDCP78527 AC023141.13-201ENST00000604991 943 ntBASIC12.9□□□□□ -0.35
PRKDCP78527 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.9□□□□□ -0.35
PRKDCP78527 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 AC096633.1-201ENST00000422446 749 ntBASIC12.89□□□□□ -0.35
PRKDCP78527 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.89□□□□□ -0.35
PRKDCP78527 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC12.89□□□□□ -0.35
PRKDCP78527 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
PRKDCP78527 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC12.89□□□□□ -0.35
PRKDCP78527 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
PRKDCP78527 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC12.89□□□□□ -0.35
PRKDCP78527 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC12.89□□□□□ -0.35
PRKDCP78527 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC12.89□□□□□ -0.35
PRKDCP78527 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
PRKDCP78527 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
PRKDCP78527 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
PRKDCP78527 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC12.89□□□□□ -0.35
PRKDCP78527 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
PRKDCP78527 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PRKDCP78527 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
PRKDCP78527 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
PRKDCP78527 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
PRKDCP78527 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.88□□□□□ -0.35
PRKDCP78527 AC132938.6-201ENST00000623828 1655 ntBASIC12.88□□□□□ -0.35
PRKDCP78527 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.88□□□□□ -0.35
PRKDCP78527 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.88□□□□□ -0.35
PRKDCP78527 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC12.88□□□□□ -0.35
PRKDCP78527 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.88□□□□□ -0.35
PRKDCP78527 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC12.88□□□□□ -0.35
PRKDCP78527 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 AC005082.1-201ENST00000413042 2259 ntBASIC12.88□□□□□ -0.35
PRKDCP78527 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC12.88□□□□□ -0.35
PRKDCP78527 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC12.88□□□□□ -0.35
PRKDCP78527 RPS15P9-201ENST00000494093 319 ntBASIC12.88□□□□□ -0.35
PRKDCP78527 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.88□□□□□ -0.35
PRKDCP78527 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms