Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.48■□□□□ 0.39
HNF4AP41235 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.48■□□□□ 0.39
HNF4AP41235 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 AC092597.1-201ENST00000487352 616 ntBASIC17.48■□□□□ 0.39
HNF4AP41235 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.48■□□□□ 0.39
HNF4AP41235 DUTP2-201ENST00000519164 463 ntBASIC17.48■□□□□ 0.39
HNF4AP41235 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.48■□□□□ 0.39
HNF4AP41235 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HNF4AP41235 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.48■□□□□ 0.39
HNF4AP41235 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
HNF4AP41235 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.48■□□□□ 0.39
HNF4AP41235 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HNF4AP41235 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
HNF4AP41235 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HNF4AP41235 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.47■□□□□ 0.39
HNF4AP41235 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.47■□□□□ 0.39
HNF4AP41235 AC063952.2-201ENST00000498792 1227 ntBASIC17.47■□□□□ 0.39
HNF4AP41235 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.47■□□□□ 0.39
HNF4AP41235 AC022616.7-201ENST00000525383 220 ntBASIC17.47■□□□□ 0.39
HNF4AP41235 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.47■□□□□ 0.39
HNF4AP41235 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.47■□□□□ 0.39
HNF4AP41235 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.47■□□□□ 0.39
HNF4AP41235 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HNF4AP41235 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HNF4AP41235 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HNF4AP41235 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HNF4AP41235 KRT18P55-202ENST00000578578 1546 ntBASIC17.47■□□□□ 0.39
HNF4AP41235 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HNF4AP41235 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.46■□□□□ 0.39
HNF4AP41235 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 STARP1-201ENST00000397973 869 ntBASIC17.46■□□□□ 0.39
HNF4AP41235 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.46■□□□□ 0.39
HNF4AP41235 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 AC112907.2-201ENST00000448639 330 ntBASIC17.46■□□□□ 0.39
HNF4AP41235 HOMER2P1-201ENST00000455653 964 ntBASIC17.46■□□□□ 0.39
HNF4AP41235 AC113404.2-201ENST00000507884 177 ntBASIC17.46■□□□□ 0.39
HNF4AP41235 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.46■□□□□ 0.39
HNF4AP41235 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.46■□□□□ 0.39
HNF4AP41235 AC079602.3-201ENST00000623931 403 ntBASIC17.46■□□□□ 0.39
HNF4AP41235 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
HNF4AP41235 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
HNF4AP41235 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
HNF4AP41235 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HNF4AP41235 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HNF4AP41235 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
HNF4AP41235 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HNF4AP41235 GNAS-203ENST00000306120 1878 ntBASIC17.46■□□□□ 0.38
HNF4AP41235 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.38
HNF4AP41235 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.45■□□□□ 0.38
HNF4AP41235 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HNF4AP41235 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HNF4AP41235 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HNF4AP41235 KRT89P-201ENST00000620027 1478 ntBASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms