Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 PCDHA12-202ENST00000613593 2588 ntBASIC18.11■□□□□ 0.49
CCNFP41002 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CCNFP41002 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCNFP41002 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.11■□□□□ 0.49
CCNFP41002 KRT18P23-201ENST00000435622 1283 ntBASIC18.11■□□□□ 0.49
CCNFP41002 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.11■□□□□ 0.49
CCNFP41002 AC009947.2-201ENST00000444014 672 ntBASIC18.11■□□□□ 0.49
CCNFP41002 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.11■□□□□ 0.49
CCNFP41002 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.11■□□□□ 0.49
CCNFP41002 AC112497.1-201ENST00000624824 639 ntBASIC18.11■□□□□ 0.49
CCNFP41002 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CCNFP41002 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.11■□□□□ 0.49
CCNFP41002 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCNFP41002 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.11■□□□□ 0.49
CCNFP41002 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCNFP41002 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.1■□□□□ 0.49
CCNFP41002 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.1■□□□□ 0.49
CCNFP41002 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.1■□□□□ 0.49
CCNFP41002 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CCNFP41002 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
CCNFP41002 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNFP41002 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNFP41002 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.1■□□□□ 0.49
CCNFP41002 AL138966.2-201ENST00000621997 464 ntBASIC18.1■□□□□ 0.49
CCNFP41002 AC141257.4-201ENST00000634557 245 ntBASIC18.1■□□□□ 0.49
CCNFP41002 AC136944.6-201ENST00000634818 245 ntBASIC18.1■□□□□ 0.49
CCNFP41002 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.1■□□□□ 0.49
CCNFP41002 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.1■□□□□ 0.49
CCNFP41002 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
CCNFP41002 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCNFP41002 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCNFP41002 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCNFP41002 AL023806.1-201ENST00000603994 1649 ntBASIC18.09■□□□□ 0.49
CCNFP41002 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.09■□□□□ 0.49
CCNFP41002 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCNFP41002 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 TERF1P1-201ENST00000311003 1181 ntBASIC18.09■□□□□ 0.49
CCNFP41002 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCNFP41002 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.09■□□□□ 0.49
CCNFP41002 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.09■□□□□ 0.49
CCNFP41002 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.09■□□□□ 0.49
CCNFP41002 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.09■□□□□ 0.49
CCNFP41002 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms