Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL589182.2-201ENST00000619332 1049 ntBASIC17.17■□□□□ 0.34
COL5A1P20908 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.17■□□□□ 0.34
COL5A1P20908 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A1P20908 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
COL5A1P20908 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A1P20908 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
COL5A1P20908 AC093010.1-201ENST00000473625 1624 ntBASIC17.16■□□□□ 0.34
COL5A1P20908 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL5A1P20908 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.16■□□□□ 0.34
COL5A1P20908 GMCL1P1-201ENST00000463439 1581 ntBASIC17.16■□□□□ 0.34
COL5A1P20908 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A1P20908 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL5A1P20908 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A1P20908 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.16■□□□□ 0.34
COL5A1P20908 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL5A1P20908 AC148477.5-201ENST00000625164 1645 ntBASIC17.16■□□□□ 0.34
COL5A1P20908 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A1P20908 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A1P20908 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL5A1P20908 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A1P20908 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.15■□□□□ 0.34
COL5A1P20908 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 KRT18P2-201ENST00000447938 1258 ntBASIC17.15■□□□□ 0.34
COL5A1P20908 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.15■□□□□ 0.34
COL5A1P20908 AC005829.1-201ENST00000570002 483 ntBASIC17.15■□□□□ 0.34
COL5A1P20908 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.15■□□□□ 0.34
COL5A1P20908 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
COL5A1P20908 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.15■□□□□ 0.34
COL5A1P20908 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A1P20908 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A1P20908 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL5A1P20908 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.15■□□□□ 0.34
COL5A1P20908 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A1P20908 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.14■□□□□ 0.34
COL5A1P20908 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL5A1P20908 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL5A1P20908 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL5A1P20908 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL5A1P20908 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL5A1P20908 RFPL4AP1-201ENST00000530883 850 ntBASIC17.14■□□□□ 0.34
COL5A1P20908 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
COL5A1P20908 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.14■□□□□ 0.34
COL5A1P20908 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.14■□□□□ 0.34
COL5A1P20908 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.14■□□□□ 0.34
COL5A1P20908 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.14■□□□□ 0.34
COL5A1P20908 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
COL5A1P20908 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.14■□□□□ 0.33
COL5A1P20908 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL5A1P20908 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.14■□□□□ 0.33
COL5A1P20908 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.14■□□□□ 0.33
COL5A1P20908 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.14■□□□□ 0.33
COL5A1P20908 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.14■□□□□ 0.33
COL5A1P20908 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.14■□□□□ 0.33
COL5A1P20908 AC010654.1-201ENST00000615722 808 ntBASIC17.14■□□□□ 0.33
COL5A1P20908 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL5A1P20908 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A1P20908 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A1P20908 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A1P20908 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms