Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 VENTXP5-201ENST00000523979 775 ntBASIC21.25■□□□□ 0.99
HMGB1P09429 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.25■□□□□ 0.99
HMGB1P09429 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HMGB1P09429 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HMGB1P09429 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.25■□□□□ 0.99
HMGB1P09429 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
HMGB1P09429 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGB1P09429 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 AL671277.2-201ENST00000458060 996 ntBASIC21.24■□□□□ 0.99
HMGB1P09429 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.24■□□□□ 0.99
HMGB1P09429 AC083849.1-201ENST00000615227 514 ntBASIC21.24■□□□□ 0.99
HMGB1P09429 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGB1P09429 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HMGB1P09429 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
HMGB1P09429 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGB1P09429 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGB1P09429 AC012317.2-201ENST00000623305 2251 ntBASIC21.24■□□□□ 0.99
HMGB1P09429 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
HMGB1P09429 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.23■□□□□ 0.99
HMGB1P09429 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HMGB1P09429 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.23■□□□□ 0.99
HMGB1P09429 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
HMGB1P09429 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
HMGB1P09429 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.23■□□□□ 0.99
HMGB1P09429 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.23■□□□□ 0.99
HMGB1P09429 AC005332.3-201ENST00000589904 676 ntBASIC21.23■□□□□ 0.99
HMGB1P09429 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HMGB1P09429 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.23■□□□□ 0.99
HMGB1P09429 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGB1P09429 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
HMGB1P09429 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.22■□□□□ 0.99
HMGB1P09429 SPDYE13P-201ENST00000445314 798 ntBASIC21.22■□□□□ 0.99
HMGB1P09429 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 AL390719.2-201ENST00000606993 987 ntBASIC21.22■□□□□ 0.99
HMGB1P09429 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGB1P09429 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGB1P09429 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGB1P09429 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms