Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHGA1Q9Y5H4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA1Q9Y5H4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHGA1Q9Y5H4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AP006288.1-201ENST00000446065 395 ntBASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AC006557.2-201ENST00000592985 1240 ntBASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 LINC02084-201ENST00000606069 1096 ntBASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 MIR1199-201ENST00000621445 119 ntBASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 AL022326.1-202ENST00000641533 845 ntBASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA1Q9Y5H4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.27■□□□□ 0.35
PCDHGA1Q9Y5H4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 AC097374.2-201ENST00000618617 1306 ntBASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA1Q9Y5H4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC211486.1-202ENST00000416371 468 ntBASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC007967.2-201ENST00000432613 625 ntBASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 DNAJB3-202ENST00000449667 1266 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms