Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
RNF39Q9H2S5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF39Q9H2S5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RNF39Q9H2S5 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF39Q9H2S5 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF39Q9H2S5 KRT8P50-201ENST00000562022 1438 ntBASIC20.1■□□□□ 0.81
RNF39Q9H2S5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF39Q9H2S5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 SPRR3-202ENST00000331860 985 ntAPPRIS P2 TSL 3 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 RNU6-1176P-201ENST00000390955 107 ntBASIC20.09■□□□□ 0.81
RNF39Q9H2S5 AP002383.4-201ENST00000442518 975 ntBASIC20.09■□□□□ 0.81
RNF39Q9H2S5 TSSC2-201ENST00000450217 709 ntBASIC20.09■□□□□ 0.81
RNF39Q9H2S5 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 LINC00992-201ENST00000504107 617 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 LINC00648-204ENST00000557749 443 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 AC016542.1-201ENST00000608259 493 ntBASIC20.09■□□□□ 0.81
RNF39Q9H2S5 AC012313.10-201ENST00000623509 926 ntBASIC20.09■□□□□ 0.81
RNF39Q9H2S5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 SLC25A24-204ENST00000569674 2357 ntBASIC20.09■□□□□ 0.81
RNF39Q9H2S5 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF39Q9H2S5 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 AC099343.3-201ENST00000605834 2503 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 TRIM60P13-201ENST00000432350 1283 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 PVRIG2P-201ENST00000435460 978 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 BX276092.5-203ENST00000456199 560 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 MTND4P2-201ENST00000507767 1203 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 KRT126P-201ENST00000549467 1181 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 AGGF1P8-201ENST00000562979 1000 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 MIR3180-1-201ENST00000580374 94 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 MIR3180-3-201ENST00000584616 94 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 RPL21P136-201ENST00000605378 396 ntBASIC20.08■□□□□ 0.81
RNF39Q9H2S5 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF39Q9H2S5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 AP000526.1-201ENST00000603308 1388 ntBASIC20.08■□□□□ 0.8
RNF39Q9H2S5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
RNF39Q9H2S5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 APTX-203ENST00000379813 1121 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AL513285.1-201ENST00000423187 432 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AC131934.1-201ENST00000527799 912 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AC015878.2-201ENST00000584331 361 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AL121672.3-201ENST00000608644 468 ntBASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AC006946.3-201ENST00000609791 756 ntBASIC20.07■□□□□ 0.8
RNF39Q9H2S5 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AC091046.2-201ENST00000620775 665 ntBASIC20.07■□□□□ 0.8
RNF39Q9H2S5 AC006328.2-201ENST00000623198 397 ntBASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms