Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 ELL2P1-201ENST00000413990 1906 ntBASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 TBC1D3P5-201ENST00000579401 1545 ntBASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 FAM8A3P-201ENST00000427218 844 ntBASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 MKNK2P1-201ENST00000437526 628 ntBASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.18■■□□□ 1.3
SHANK3Q9BYB0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 RPS15P9-201ENST00000494093 319 ntBASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 PDPK2P-202ENST00000562415 1191 ntBASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 MIR4469-201ENST00000583919 79 ntBASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHANK3Q9BYB0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 AC073130.3-201ENST00000624389 2278 ntBASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHANK3Q9BYB0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 AC005829.1-201ENST00000570002 483 ntBASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHANK3Q9BYB0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 LHX6-205ENST00000464484 666 ntTSL 2 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 C20orf181-201ENST00000623918 480 ntBASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
SHANK3Q9BYB0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms