Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 CA15P1-201ENST00000481698 905 ntBASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC28BQ9BUN5 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 AL355802.2-201ENST00000402069 882 ntBASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC28BQ9BUN5 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AC009065.1-201ENST00000564055 1225 ntBASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 RARRES2P10-201ENST00000564312 460 ntBASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC28BQ9BUN5 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms