Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 RAB43P1-201ENST00000561790 589 ntBASIC18.15■□□□□ 0.5
TTC28Q96AY4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 AC148477.5-201ENST00000625164 1645 ntBASIC18.14■□□□□ 0.5
TTC28Q96AY4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.14■□□□□ 0.5
TTC28Q96AY4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.14■□□□□ 0.5
TTC28Q96AY4 KRT8P48-201ENST00000515599 1220 ntBASIC18.14■□□□□ 0.5
TTC28Q96AY4 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.14■□□□□ 0.5
TTC28Q96AY4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
TTC28Q96AY4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
TTC28Q96AY4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.14■□□□□ 0.5
TTC28Q96AY4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
TTC28Q96AY4 AC068587.9-201ENST00000641814 219 ntBASIC18.14■□□□□ 0.5
TTC28Q96AY4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 AL024508.2-201ENST00000607749 1894 ntBASIC18.14■□□□□ 0.49
TTC28Q96AY4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 AL512384.1-201ENST00000406683 331 ntBASIC18.14■□□□□ 0.49
TTC28Q96AY4 KRT18P65-201ENST00000439811 1286 ntBASIC18.14■□□□□ 0.49
TTC28Q96AY4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TTC28Q96AY4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 TEX21P-204ENST00000641479 1693 ntBASIC18.14■□□□□ 0.49
TTC28Q96AY4 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TTC28Q96AY4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 TSSK5P-201ENST00000423978 907 ntBASIC18.13■□□□□ 0.49
TTC28Q96AY4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 AL512638.1-201ENST00000457493 794 ntBASIC18.13■□□□□ 0.49
TTC28Q96AY4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 AL512408.1-201ENST00000569378 2000 ntBASIC18.13■□□□□ 0.49
TTC28Q96AY4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 AC007967.3-201ENST00000434308 558 ntBASIC18.13■□□□□ 0.49
TTC28Q96AY4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
TTC28Q96AY4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TTC28Q96AY4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 AC138969.3-201ENST00000546612 1459 ntBASIC18.12■□□□□ 0.49
TTC28Q96AY4 AC138932.2-201ENST00000548268 1459 ntBASIC18.12■□□□□ 0.49
TTC28Q96AY4 AC126755.4-201ENST00000549796 1459 ntBASIC18.12■□□□□ 0.49
TTC28Q96AY4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 AC098614.1-201ENST00000368528 745 ntBASIC18.12■□□□□ 0.49
TTC28Q96AY4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TTC28Q96AY4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.12■□□□□ 0.49
TTC28Q96AY4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms