Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 Z83836.1-201ENST00000624605 1642 ntBASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 AP000347.1-202ENST00000435868 847 ntBASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 AL390719.2-201ENST00000606993 987 ntBASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.37■□□□□ 0.53
SHROOM3Q8TF72 AC006116.8-202ENST00000587620 1550 ntBASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 LINC00602-201ENST00000629776 2065 ntBASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 TSPY22P-201ENST00000427496 604 ntBASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 AC112698.1-201ENST00000510299 916 ntBASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 AC009949.1-201ENST00000623048 1830 ntBASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHROOM3Q8TF72 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AL691432.3-201ENST00000621860 400 ntBASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 TPSP2-201ENST00000561760 610 ntBASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AC012615.1-201ENST00000565797 1299 ntBASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AC111152.3-201ENST00000569699 673 ntBASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 AL592071.1-201ENST00000611956 408 ntBASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SHROOM3Q8TF72 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 CHCHD2P8-201ENST00000429873 447 ntBASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 KRT18P65-201ENST00000439811 1286 ntBASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 AC012317.2-201ENST00000623305 2251 ntBASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SHROOM3Q8TF72 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM3Q8TF72 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms