Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 MYLKP1-201ENST00000509077 1580 ntBASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 AC113410.3-201ENST00000623366 203 ntBASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ZNF540Q8NDQ6 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 HTR7P1-201ENST00000538670 1336 ntBASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 AP001094.4-201ENST00000579008 2176 ntBASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ECEL1P3-201ENST00000427961 737 ntBASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 AL355355.2-201ENST00000442321 338 ntBASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.73■□□□□ 0.27
ZNF540Q8NDQ6 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 AC006116.8-202ENST00000587620 1550 ntBASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms