Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC65Q8IXS2 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 AP003733.1-201ENST00000491725 852 ntBASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC65Q8IXS2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 AC004263.2-201ENST00000617183 678 ntBASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC65Q8IXS2 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.02■□□□□ 0.79
CCDC65Q8IXS2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 KRT18P65-201ENST00000439811 1286 ntBASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 AL671277.2-201ENST00000458060 996 ntBASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 VENTXP5-201ENST00000523979 775 ntBASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC65Q8IXS2 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms