Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.77■■□□□ 1.08
BRCA1P38398 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.77■■□□□ 1.08
BRCA1P38398 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.77■■□□□ 1.08
BRCA1P38398 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.77■■□□□ 1.08
BRCA1P38398 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.77■■□□□ 1.08
BRCA1P38398 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
BRCA1P38398 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.77■■□□□ 1.08
BRCA1P38398 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
BRCA1P38398 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.77■■□□□ 1.08
BRCA1P38398 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.77■■□□□ 1.08
BRCA1P38398 DUX4L17-201ENST00000557360 1267 ntBASIC21.77■■□□□ 1.08
BRCA1P38398 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.77■■□□□ 1.08
BRCA1P38398 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.77■■□□□ 1.08
BRCA1P38398 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BRCA1P38398 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.77■■□□□ 1.08
BRCA1P38398 AC099522.2-201ENST00000607001 744 ntBASIC21.77■■□□□ 1.08
BRCA1P38398 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
BRCA1P38398 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.77■■□□□ 1.08
BRCA1P38398 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.77■■□□□ 1.08
BRCA1P38398 AC007064.4-201ENST00000637740 555 ntBASIC21.77■■□□□ 1.08
BRCA1P38398 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
BRCA1P38398 AL158211.5-201ENST00000623583 2518 ntBASIC21.76■■□□□ 1.07
BRCA1P38398 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
BRCA1P38398 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 AL161938.1-201ENST00000569833 2180 ntBASIC21.76■■□□□ 1.07
BRCA1P38398 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
BRCA1P38398 SIRPAP1-201ENST00000448467 1770 ntBASIC21.76■■□□□ 1.07
BRCA1P38398 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BRCA1P38398 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
BRCA1P38398 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.76■■□□□ 1.07
BRCA1P38398 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
BRCA1P38398 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.76■■□□□ 1.07
BRCA1P38398 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
BRCA1P38398 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
BRCA1P38398 AC006116.8-202ENST00000587620 1550 ntBASIC21.75■■□□□ 1.07
BRCA1P38398 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.75■■□□□ 1.07
BRCA1P38398 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 AC023141.13-201ENST00000604991 943 ntBASIC21.75■■□□□ 1.07
BRCA1P38398 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
BRCA1P38398 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 AC092919.2-201ENST00000623631 1645 ntBASIC21.75■■□□□ 1.07
BRCA1P38398 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
BRCA1P38398 AC025580.3-201ENST00000617932 1424 ntBASIC21.75■■□□□ 1.07
BRCA1P38398 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
BRCA1P38398 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.75■■□□□ 1.07
BRCA1P38398 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 KRT18P32-201ENST00000424695 1287 ntBASIC21.75■■□□□ 1.07
BRCA1P38398 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.75■■□□□ 1.07
BRCA1P38398 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.75■■□□□ 1.07
BRCA1P38398 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.75■■□□□ 1.07
BRCA1P38398 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BRCA1P38398 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.74■■□□□ 1.07
BRCA1P38398 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
BRCA1P38398 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.74■■□□□ 1.07
BRCA1P38398 AL049812.1-201ENST00000432563 2267 ntBASIC21.74■■□□□ 1.07
BRCA1P38398 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC21.74■■□□□ 1.07
BRCA1P38398 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.74■■□□□ 1.07
BRCA1P38398 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.74■■□□□ 1.07
BRCA1P38398 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.74■■□□□ 1.07
BRCA1P38398 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
BRCA1P38398 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.74■■□□□ 1.07
BRCA1P38398 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.74■■□□□ 1.07
BRCA1P38398 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRCA1P38398 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
BRCA1P38398 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
BRCA1P38398 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
BRCA1P38398 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.74■■□□□ 1.07
BRCA1P38398 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.74■■□□□ 1.07
BRCA1P38398 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms