Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.53■□□□□ 0.56
VCANP13611 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 AC113404.2-201ENST00000507884 177 ntBASIC18.53■□□□□ 0.56
VCANP13611 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.53■□□□□ 0.56
VCANP13611 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
VCANP13611 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VCANP13611 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.53■□□□□ 0.56
VCANP13611 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VCANP13611 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VCANP13611 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.53■□□□□ 0.56
VCANP13611 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.53■□□□□ 0.56
VCANP13611 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.53■□□□□ 0.56
VCANP13611 MIR4751-201ENST00000578027 74 ntBASIC18.53■□□□□ 0.56
VCANP13611 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.52■□□□□ 0.56
VCANP13611 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.52■□□□□ 0.56
VCANP13611 KLF2P3-201ENST00000451977 1087 ntBASIC18.52■□□□□ 0.56
VCANP13611 AC125807.1-201ENST00000483097 614 ntBASIC18.52■□□□□ 0.56
VCANP13611 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.52■□□□□ 0.56
VCANP13611 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.52■□□□□ 0.56
VCANP13611 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.52■□□□□ 0.56
VCANP13611 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.52■□□□□ 0.56
VCANP13611 CNN2P2-201ENST00000443536 909 ntBASIC18.52■□□□□ 0.56
VCANP13611 CNN2P3-201ENST00000450201 906 ntBASIC18.52■□□□□ 0.56
VCANP13611 AL136317.3-201ENST00000618497 906 ntBASIC18.52■□□□□ 0.56
VCANP13611 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCANP13611 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VCANP13611 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VCANP13611 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VCANP13611 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.51■□□□□ 0.55
VCANP13611 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.51■□□□□ 0.55
VCANP13611 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.51■□□□□ 0.55
VCANP13611 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.51■□□□□ 0.55
VCANP13611 TUBB3P1-201ENST00000405796 1332 ntBASIC18.51■□□□□ 0.55
VCANP13611 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.51■□□□□ 0.55
VCANP13611 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.51■□□□□ 0.55
VCANP13611 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
VCANP13611 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.51■□□□□ 0.55
VCANP13611 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
VCANP13611 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.51■□□□□ 0.55
VCANP13611 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.51■□□□□ 0.55
VCANP13611 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
VCANP13611 AC067863.1-201ENST00000494933 530 ntBASIC18.51■□□□□ 0.55
VCANP13611 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCANP13611 LINC00602-201ENST00000629776 2065 ntBASIC18.51■□□□□ 0.55
VCANP13611 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.51■□□□□ 0.55
VCANP13611 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 AC079776.1-201ENST00000401540 1152 ntBASIC18.5■□□□□ 0.55
VCANP13611 IGHV3-65-201ENST00000523210 341 ntBASIC18.5■□□□□ 0.55
VCANP13611 Z82202.1-201ENST00000623446 1880 ntBASIC18.5■□□□□ 0.55
VCANP13611 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
VCANP13611 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.5■□□□□ 0.55
VCANP13611 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.5■□□□□ 0.55
VCANP13611 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.5■□□□□ 0.55
VCANP13611 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.5■□□□□ 0.55
VCANP13611 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VCANP13611 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCANP13611 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
VCANP13611 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.5■□□□□ 0.55
VCANP13611 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms