Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 AL121761.2-201ENST00000598007 1648 ntBASIC17.57■□□□□ 0.4
HDAC3O15379 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 CROCCP2-202ENST00000412962 2773 ntBASIC17.57■□□□□ 0.4
HDAC3O15379 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HDAC3O15379 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 AL135905.2-201ENST00000584934 1404 ntBASIC17.56■□□□□ 0.4
HDAC3O15379 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
HDAC3O15379 NKILA-202ENST00000614771 2598 ntBASIC17.56■□□□□ 0.4
HDAC3O15379 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HDAC3O15379 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.56■□□□□ 0.4
HDAC3O15379 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HDAC3O15379 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.56■□□□□ 0.4
HDAC3O15379 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
HDAC3O15379 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HDAC3O15379 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC3O15379 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC3O15379 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 AC100803.2-201ENST00000562459 1963 ntBASIC17.55■□□□□ 0.4
HDAC3O15379 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HDAC3O15379 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HDAC3O15379 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 ID1-201ENST00000376105 1233 ntBASIC17.55■□□□□ 0.4
HDAC3O15379 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 NUDT16P1-203ENST00000513809 620 ntBASIC17.55■□□□□ 0.4
HDAC3O15379 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.55■□□□□ 0.4
HDAC3O15379 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.55■□□□□ 0.4
HDAC3O15379 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
HDAC3O15379 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
HDAC3O15379 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
HDAC3O15379 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 AC132938.6-201ENST00000623828 1655 ntBASIC17.55■□□□□ 0.4
HDAC3O15379 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC3O15379 AC011676.5-201ENST00000624864 2660 ntBASIC17.55■□□□□ 0.4
HDAC3O15379 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HDAC3O15379 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms