Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RIN3-211ENST00000557762 517 ntTSL 3 BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 SP100-208ENST00000427101 1922 ntTSL 2 BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 AL020989.1-201ENST00000422979 469 ntBASIC31.04■■■□□ 2.56
CCDC88BA6NC98 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
CCDC88BA6NC98 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 IGHV3-65-201ENST00000523210 341 ntBASIC31.03■■■□□ 2.56
CCDC88BA6NC98 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 AC008667.4-201ENST00000607370 168 ntBASIC31.03■■■□□ 2.56
CCDC88BA6NC98 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 NCF1C-201ENST00000438382 1427 ntBASIC31.03■■■□□ 2.56
CCDC88BA6NC98 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC31.03■■■□□ 2.56
CCDC88BA6NC98 HTR5BP-201ENST00000430851 1154 ntBASIC31.02■■■□□ 2.56
CCDC88BA6NC98 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 RFPL4AP1-201ENST00000530883 850 ntBASIC31.02■■■□□ 2.56
CCDC88BA6NC98 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 MIR4469-201ENST00000583919 79 ntBASIC31.02■■■□□ 2.56
CCDC88BA6NC98 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88BA6NC98 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 SLC4A1APP2-201ENST00000424054 1259 ntBASIC31.01■■■□□ 2.56
CCDC88BA6NC98 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC88BA6NC98 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 KLF4P1-201ENST00000412782 1185 ntBASIC31.01■■■□□ 2.55
CCDC88BA6NC98 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC88BA6NC98 AL596442.2-201ENST00000610240 980 ntBASIC31.01■■■□□ 2.55
CCDC88BA6NC98 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC88BA6NC98 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC88BA6NC98 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC31■■■□□ 2.55
CCDC88BA6NC98 RPS15P9-201ENST00000494093 319 ntBASIC31■■■□□ 2.55
CCDC88BA6NC98 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC31■■■□□ 2.55
CCDC88BA6NC98 CFL1-202ENST00000524553 860 ntTSL 2 BASIC31■■■□□ 2.55
CCDC88BA6NC98 AC005829.1-201ENST00000570002 483 ntBASIC31■■■□□ 2.55
CCDC88BA6NC98 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC31■■■□□ 2.55
CCDC88BA6NC98 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC31■■■□□ 2.55
CCDC88BA6NC98 FUT8-AS1-201ENST00000621019 1521 ntBASIC31■■■□□ 2.55
CCDC88BA6NC98 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC88BA6NC98 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC31■■■□□ 2.55
CCDC88BA6NC98 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC88BA6NC98 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC88BA6NC98 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC30.99■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms