Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 AC099343.3-201ENST00000605834 2503 ntBASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LIMD1Q9UGP4 AC020763.4-201ENST00000623414 4170 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AL356309.3-201ENST00000624132 1934 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 DNAJB3-201ENST00000446806 729 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AC004967.1-201ENST00000453589 447 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AC040169.1-201ENST00000565382 521 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AC008687.5-201ENST00000593746 558 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AC134684.3-201ENST00000641758 218 ntBASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMD1Q9UGP4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 AC011467.2-201ENST00000598425 242 ntBASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 AL138831.2-201ENST00000606564 490 ntBASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms