Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP000692.2-201ENST00000608391 879 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 AP001412.1-201ENST00000608405 714 ntBASIC15.79■□□□□ 0.12
NKX3-1Q99801 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX3-1Q99801 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX3-1Q99801 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 AL135905.2-201ENST00000584934 1404 ntBASIC15.78■□□□□ 0.12
NKX3-1Q99801 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 TSPY7P-201ENST00000431358 1114 ntBASIC15.78■□□□□ 0.12
NKX3-1Q99801 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 RARRES2P10-201ENST00000564312 460 ntBASIC15.78■□□□□ 0.12
NKX3-1Q99801 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 CD177P1-201ENST00000606252 935 ntBASIC15.78■□□□□ 0.12
NKX3-1Q99801 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX3-1Q99801 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NKX3-1Q99801 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.77■□□□□ 0.12
NKX3-1Q99801 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.77■□□□□ 0.12
NKX3-1Q99801 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 AC012618.2-201ENST00000428058 849 ntBASIC15.77■□□□□ 0.12
NKX3-1Q99801 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.77■□□□□ 0.12
NKX3-1Q99801 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.77■□□□□ 0.12
NKX3-1Q99801 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.77■□□□□ 0.12
NKX3-1Q99801 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.77■□□□□ 0.12
NKX3-1Q99801 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NKX3-1Q99801 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 FSCN1P1-201ENST00000568912 1481 ntBASIC15.77■□□□□ 0.11
NKX3-1Q99801 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.11
NKX3-1Q99801 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
NKX3-1Q99801 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AC034236.2-201ENST00000606662 1610 ntBASIC15.76■□□□□ 0.11
NKX3-1Q99801 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms