Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 ADH5P3-201ENST00000433842 1137 ntBASIC17.76■□□□□ 0.43
VPS13AQ96RL7 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.76■□□□□ 0.43
VPS13AQ96RL7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 IGLL3P-201ENST00000412472 434 ntBASIC17.75■□□□□ 0.43
VPS13AQ96RL7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 LINC01126-201ENST00000623515 1646 ntBASIC17.75■□□□□ 0.43
VPS13AQ96RL7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 AC236430.1-201ENST00000402231 743 ntBASIC17.75■□□□□ 0.43
VPS13AQ96RL7 AC004461.1-201ENST00000412461 403 ntBASIC17.75■□□□□ 0.43
VPS13AQ96RL7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS13AQ96RL7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC010460.3-201ENST00000511359 1579 ntBASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AL606495.2-201ENST00000605867 535 ntBASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC006557.2-201ENST00000592985 1240 ntBASIC17.74■□□□□ 0.43
VPS13AQ96RL7 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC004877.2-201ENST00000623941 599 ntBASIC17.74■□□□□ 0.43
VPS13AQ96RL7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS13AQ96RL7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 MIR149-201ENST00000384879 89 ntBASIC17.73■□□□□ 0.43
VPS13AQ96RL7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 AL032819.2-201ENST00000624543 2162 ntBASIC17.73■□□□□ 0.43
VPS13AQ96RL7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS13AQ96RL7 AC051619.7-201ENST00000568314 623 ntBASIC17.73■□□□□ 0.43
VPS13AQ96RL7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.72■□□□□ 0.43
VPS13AQ96RL7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 AC105339.1-204ENST00000636249 355 ntBASIC17.72■□□□□ 0.43
VPS13AQ96RL7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms