Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 BX088651.1-201ENST00000540551 451 ntBASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.77■□□□□ 0.28
ZNF540Q8NDQ6 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 AL023806.1-201ENST00000603994 1649 ntBASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF540Q8NDQ6 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TSPY7P-201ENST00000431358 1114 ntBASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 AL096828.2-201ENST00000567259 1965 ntBASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF540Q8NDQ6 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 AC211429.1-201ENST00000415277 523 ntBASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
ZNF540Q8NDQ6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms