Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC23.91■■□□□ 1.42
USP54Q70EL1 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC23.91■■□□□ 1.42
USP54Q70EL1 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.91■■□□□ 1.42
USP54Q70EL1 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC23.91■■□□□ 1.42
USP54Q70EL1 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC23.91■■□□□ 1.42
USP54Q70EL1 AC004706.3-202ENST00000621574 984 ntBASIC23.91■■□□□ 1.42
USP54Q70EL1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC23.91■■□□□ 1.42
USP54Q70EL1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.91■■□□□ 1.42
USP54Q70EL1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP54Q70EL1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
USP54Q70EL1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC23.9■■□□□ 1.42
USP54Q70EL1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USP54Q70EL1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP54Q70EL1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP54Q70EL1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP54Q70EL1 AC003669.1-201ENST00000334569 611 ntBASIC23.9■■□□□ 1.42
USP54Q70EL1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USP54Q70EL1 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP54Q70EL1 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC23.9■■□□□ 1.42
USP54Q70EL1 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
USP54Q70EL1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC23.9■■□□□ 1.42
USP54Q70EL1 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
USP54Q70EL1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC23.9■■□□□ 1.42
USP54Q70EL1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.9■■□□□ 1.42
USP54Q70EL1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.9■■□□□ 1.42
USP54Q70EL1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
USP54Q70EL1 AL049757.1-201ENST00000616842 1596 ntBASIC23.9■■□□□ 1.42
USP54Q70EL1 AC004817.3-201ENST00000602957 2129 ntBASIC23.9■■□□□ 1.42
USP54Q70EL1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP54Q70EL1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
USP54Q70EL1 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP54Q70EL1 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC23.89■■□□□ 1.42
USP54Q70EL1 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC23.89■■□□□ 1.42
USP54Q70EL1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC23.89■■□□□ 1.42
USP54Q70EL1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
USP54Q70EL1 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC23.89■■□□□ 1.42
USP54Q70EL1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.89■■□□□ 1.42
USP54Q70EL1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP54Q70EL1 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC23.89■■□□□ 1.42
USP54Q70EL1 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP54Q70EL1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP54Q70EL1 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP54Q70EL1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP54Q70EL1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC23.89■■□□□ 1.41
USP54Q70EL1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC23.89■■□□□ 1.41
USP54Q70EL1 AC004967.1-201ENST00000453589 447 ntBASIC23.89■■□□□ 1.41
USP54Q70EL1 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC23.89■■□□□ 1.41
USP54Q70EL1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC23.89■■□□□ 1.41
USP54Q70EL1 AP001160.2-201ENST00000596071 487 ntBASIC23.89■■□□□ 1.41
USP54Q70EL1 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC23.89■■□□□ 1.41
USP54Q70EL1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC23.89■■□□□ 1.41
USP54Q70EL1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP54Q70EL1 AC006504.4-201ENST00000592118 1568 ntBASIC23.88■■□□□ 1.41
USP54Q70EL1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
USP54Q70EL1 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP54Q70EL1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.88■■□□□ 1.41
USP54Q70EL1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP54Q70EL1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP54Q70EL1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC23.88■■□□□ 1.41
USP54Q70EL1 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USP54Q70EL1 AL020989.1-201ENST00000422979 469 ntBASIC23.88■■□□□ 1.41
USP54Q70EL1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC23.88■■□□□ 1.41
USP54Q70EL1 TCAP-202ENST00000578283 583 ntTSL 5 BASIC23.88■■□□□ 1.41
USP54Q70EL1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC23.88■■□□□ 1.41
USP54Q70EL1 AC022898.2-201ENST00000616822 1312 ntBASIC23.88■■□□□ 1.41
USP54Q70EL1 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP54Q70EL1 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.88■■□□□ 1.41
USP54Q70EL1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USP54Q70EL1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP54Q70EL1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USP54Q70EL1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.87■■□□□ 1.41
USP54Q70EL1 SIRPAP1-201ENST00000448467 1770 ntBASIC23.87■■□□□ 1.41
USP54Q70EL1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
USP54Q70EL1 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC23.87■■□□□ 1.41
USP54Q70EL1 YBX1P5-201ENST00000509441 847 ntBASIC23.87■■□□□ 1.41
USP54Q70EL1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC23.87■■□□□ 1.41
USP54Q70EL1 AC008667.4-201ENST00000607370 168 ntBASIC23.87■■□□□ 1.41
USP54Q70EL1 AL139424.1-201ENST00000607572 797 ntBASIC23.87■■□□□ 1.41
USP54Q70EL1 AL691403.2-201ENST00000618460 490 ntBASIC23.87■■□□□ 1.41
USP54Q70EL1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP54Q70EL1 AL096828.2-201ENST00000567259 1965 ntBASIC23.87■■□□□ 1.41
USP54Q70EL1 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC23.87■■□□□ 1.41
USP54Q70EL1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC23.87■■□□□ 1.41
USP54Q70EL1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC23.86■■□□□ 1.41
USP54Q70EL1 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms