Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 AC106028.4-201ENST00000614509 607 ntBASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 PGM5P2-202ENST00000637225 1043 ntBASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 PRSS29P-201ENST00000440800 595 ntBASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 HLA-J-202ENST00000469281 1241 ntBASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC88AQ3V6T2 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
CCDC88AQ3V6T2 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
CCDC88AQ3V6T2 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
CCDC88AQ3V6T2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AP002472.1-201ENST00000577490 586 ntBASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 MIR4469-201ENST00000583919 79 ntBASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AC006557.2-201ENST00000592985 1240 ntBASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 CROCCP3-202ENST00000420820 1947 ntBASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC88AQ3V6T2 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 AC112698.1-201ENST00000510299 916 ntBASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 AL513190.1-201ENST00000621254 727 ntBASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 C20orf181-201ENST00000623918 480 ntBASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 BX005266.1-201ENST00000473402 457 ntBASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 SNHG9-202ENST00000564014 471 ntBASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 AL031598.1-201ENST00000561511 1773 ntBASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CCDC88AQ3V6T2 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms