Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.15■□□□□ 0.34
LIM2P55344 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.15■□□□□ 0.34
LIM2P55344 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.15■□□□□ 0.34
LIM2P55344 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIM2P55344 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.15■□□□□ 0.34
LIM2P55344 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIM2P55344 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIM2P55344 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LIM2P55344 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.15■□□□□ 0.34
LIM2P55344 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIM2P55344 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.14■□□□□ 0.34
LIM2P55344 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.14■□□□□ 0.34
LIM2P55344 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LIM2P55344 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 IGHGP-201ENST00000390555 1178 ntBASIC17.14■□□□□ 0.33
LIM2P55344 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 FAM86EP-206ENST00000510506 987 ntBASIC17.14■□□□□ 0.33
LIM2P55344 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.14■□□□□ 0.33
LIM2P55344 RNF126P1-202ENST00000569893 925 ntBASIC17.14■□□□□ 0.33
LIM2P55344 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.14■□□□□ 0.33
LIM2P55344 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 LINC00602-201ENST00000629776 2065 ntBASIC17.14■□□□□ 0.33
LIM2P55344 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.14■□□□□ 0.33
LIM2P55344 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIM2P55344 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 LINC00167-201ENST00000530583 1419 ntBASIC17.13■□□□□ 0.33
LIM2P55344 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIM2P55344 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.13■□□□□ 0.33
LIM2P55344 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 ARMC10P1-201ENST00000313754 855 ntBASIC17.13■□□□□ 0.33
LIM2P55344 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.13■□□□□ 0.33
LIM2P55344 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.13■□□□□ 0.33
LIM2P55344 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.13■□□□□ 0.33
LIM2P55344 AC005332.3-201ENST00000589904 676 ntBASIC17.13■□□□□ 0.33
LIM2P55344 GPR32P1-201ENST00000601788 811 ntBASIC17.13■□□□□ 0.33
LIM2P55344 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
LIM2P55344 AC004263.2-201ENST00000617183 678 ntBASIC17.13■□□□□ 0.33
LIM2P55344 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIM2P55344 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIM2P55344 LTB4R2-202ENST00000528054 3092 ntBASIC17.13■□□□□ 0.33
LIM2P55344 AC005332.1-201ENST00000577698 1310 ntBASIC17.13■□□□□ 0.33
LIM2P55344 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.13■□□□□ 0.33
LIM2P55344 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.13■□□□□ 0.33
LIM2P55344 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 AC132938.6-201ENST00000623828 1655 ntBASIC17.13■□□□□ 0.33
LIM2P55344 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
LIM2P55344 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIM2P55344 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.12■□□□□ 0.33
LIM2P55344 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.12■□□□□ 0.33
LIM2P55344 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.12■□□□□ 0.33
LIM2P55344 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms