Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.56■□□□□ 0.56
VCANP13611 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.56■□□□□ 0.56
VCANP13611 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 FO538757.1-201ENST00000623083 1397 ntBASIC18.56■□□□□ 0.56
VCANP13611 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 BCAR1-209ENST00000546196 1340 ntBASIC18.56■□□□□ 0.56
VCANP13611 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
VCANP13611 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.56■□□□□ 0.56
VCANP13611 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.56■□□□□ 0.56
VCANP13611 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.56■□□□□ 0.56
VCANP13611 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.56■□□□□ 0.56
VCANP13611 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.56■□□□□ 0.56
VCANP13611 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCANP13611 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.55■□□□□ 0.56
VCANP13611 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.55■□□□□ 0.56
VCANP13611 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.55■□□□□ 0.56
VCANP13611 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
VCANP13611 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 AL662799.1-202ENST00000614205 422 ntBASIC18.55■□□□□ 0.56
VCANP13611 MIR6787-201ENST00000616675 61 ntBASIC18.55■□□□□ 0.56
VCANP13611 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
VCANP13611 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.55■□□□□ 0.56
VCANP13611 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 AL627223.1-201ENST00000416693 442 ntBASIC18.55■□□□□ 0.56
VCANP13611 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.55■□□□□ 0.56
VCANP13611 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.55■□□□□ 0.56
VCANP13611 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCANP13611 AC003669.1-201ENST00000334569 611 ntBASIC18.55■□□□□ 0.56
VCANP13611 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.55■□□□□ 0.56
VCANP13611 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.55■□□□□ 0.56
VCANP13611 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.55■□□□□ 0.56
VCANP13611 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VCANP13611 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.55■□□□□ 0.56
VCANP13611 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 AC008677.1-201ENST00000519230 1561 ntBASIC18.54■□□□□ 0.56
VCANP13611 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 FAM58DP-201ENST00000428076 619 ntBASIC18.54■□□□□ 0.56
VCANP13611 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.54■□□□□ 0.56
VCANP13611 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.54■□□□□ 0.56
VCANP13611 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.54■□□□□ 0.56
VCANP13611 AC010654.1-201ENST00000615722 808 ntBASIC18.54■□□□□ 0.56
VCANP13611 AC009093.7-201ENST00000623853 1223 ntBASIC18.54■□□□□ 0.56
VCANP13611 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.54■□□□□ 0.56
VCANP13611 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VCANP13611 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.54■□□□□ 0.56
VCANP13611 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VCANP13611 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.54■□□□□ 0.56
VCANP13611 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.54■□□□□ 0.56
VCANP13611 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
VCANP13611 AC092919.2-201ENST00000623631 1645 ntBASIC18.54■□□□□ 0.56
VCANP13611 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
VCANP13611 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCANP13611 AC025580.3-201ENST00000617932 1424 ntBASIC18.54■□□□□ 0.56
VCANP13611 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.54■□□□□ 0.56
VCANP13611 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.53■□□□□ 0.56
VCANP13611 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 RHOQP3-201ENST00000437982 621 ntBASIC18.53■□□□□ 0.56
VCANP13611 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCANP13611 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.53■□□□□ 0.56
VCANP13611 AC012676.1-201ENST00000574705 1949 ntBASIC18.53■□□□□ 0.56
VCANP13611 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms