Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 AQP6-203ENST00000551733 849 ntTSL 3 BASIC11.2□□□□□ -0.62
APOBP04114 DUX4L27-201ENST00000554796 1261 ntBASIC11.2□□□□□ -0.62
APOBP04114 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
APOBP04114 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC11.19□□□□□ -0.62
APOBP04114 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.19□□□□□ -0.62
APOBP04114 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 AL049757.1-201ENST00000616842 1596 ntBASIC11.19□□□□□ -0.62
APOBP04114 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC11.19□□□□□ -0.62
APOBP04114 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 ACTG1P14-201ENST00000446382 1122 ntBASIC11.19□□□□□ -0.62
APOBP04114 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC11.19□□□□□ -0.62
APOBP04114 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
APOBP04114 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC11.19□□□□□ -0.62
APOBP04114 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC11.19□□□□□ -0.62
APOBP04114 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
APOBP04114 SIRPAP1-201ENST00000448467 1770 ntBASIC11.19□□□□□ -0.62
APOBP04114 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
APOBP04114 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC11.19□□□□□ -0.62
APOBP04114 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
APOBP04114 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 SNAI3-AS1-205ENST00000568633 2096 ntBASIC11.19□□□□□ -0.62
APOBP04114 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
APOBP04114 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC11.19□□□□□ -0.62
APOBP04114 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC11.19□□□□□ -0.62
APOBP04114 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.19□□□□□ -0.62
APOBP04114 NAA60-208ENST00000570819 833 ntTSL 2 BASIC11.19□□□□□ -0.62
APOBP04114 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC11.19□□□□□ -0.62
APOBP04114 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC11.19□□□□□ -0.62
APOBP04114 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
APOBP04114 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
APOBP04114 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC11.18□□□□□ -0.62
APOBP04114 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC11.18□□□□□ -0.62
APOBP04114 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC11.18□□□□□ -0.62
APOBP04114 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC11.18□□□□□ -0.62
APOBP04114 OARD1-208ENST00000469104 704 ntTSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 MIR4751-201ENST00000578027 74 ntBASIC11.18□□□□□ -0.62
APOBP04114 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
APOBP04114 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
APOBP04114 MRPL20P1-201ENST00000400819 433 ntBASIC11.18□□□□□ -0.62
APOBP04114 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC11.18□□□□□ -0.62
APOBP04114 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
APOBP04114 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC11.18□□□□□ -0.62
APOBP04114 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC11.17□□□□□ -0.62
APOBP04114 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC11.17□□□□□ -0.62
APOBP04114 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
APOBP04114 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms