Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TM9SF3Q9HD45 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 AL591684.3-201ENST00000605187 298 ntBASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 AC120114.3-201ENST00000611923 658 ntBASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 TP73-AS1-207ENST00000624167 988 ntBASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TM9SF3Q9HD45 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 MIR149-201ENST00000384879 89 ntBASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 AC064862.7-201ENST00000604520 867 ntBASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 BX640515.1-201ENST00000617215 977 ntBASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 AC007613.1-201ENST00000572811 2597 ntBASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.07■□□□□ 0.48
TM9SF3Q9HD45 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AL590627.1-203ENST00000421194 1026 ntBASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AC096582.2-201ENST00000510860 516 ntBASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 MIR5100-201ENST00000579544 119 ntBASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AC009113.1-201ENST00000570267 2443 ntBASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TM9SF3Q9HD45 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms