Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 FEM1AP3-201ENST00000403722 1741 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.37■□□□□ 0.37
COL28A1Q2UY09 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 METTL21AP1-201ENST00000438852 635 ntBASIC17.37■□□□□ 0.37
COL28A1Q2UY09 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL28A1Q2UY09 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 AL035633.1-201ENST00000406139 838 ntBASIC17.36■□□□□ 0.37
COL28A1Q2UY09 POM121L3P-201ENST00000419331 1163 ntBASIC17.36■□□□□ 0.37
COL28A1Q2UY09 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 HNRNPDP1-201ENST00000439535 754 ntBASIC17.36■□□□□ 0.37
COL28A1Q2UY09 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 AL591424.1-201ENST00000442569 1213 ntBASIC17.36■□□□□ 0.37
COL28A1Q2UY09 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 GPR32P1-201ENST00000601788 811 ntBASIC17.36■□□□□ 0.37
COL28A1Q2UY09 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL28A1Q2UY09 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 LTB4R2-202ENST00000528054 3092 ntBASIC17.35■□□□□ 0.37
COL28A1Q2UY09 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms