Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC007375.3-201ENST00000600936 2314 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
PRKDCP78527 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
PRKDCP78527 MTCL1P1-201ENST00000446207 792 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.98□□□□□ -0.33
PRKDCP78527 AC027307.3-201ENST00000594262 1100 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.98□□□□□ -0.33
PRKDCP78527 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 AC008677.1-201ENST00000519230 1561 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.98□□□□□ -0.33
PRKDCP78527 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC12.98□□□□□ -0.33
PRKDCP78527 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC12.98□□□□□ -0.33
PRKDCP78527 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC12.98□□□□□ -0.33
PRKDCP78527 LBX2-AS1-202ENST00000603175 2083 ntBASIC12.98□□□□□ -0.33
PRKDCP78527 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
PRKDCP78527 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC12.97□□□□□ -0.33
PRKDCP78527 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 AC107890.1-201ENST00000422478 521 ntBASIC12.97□□□□□ -0.33
PRKDCP78527 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.97□□□□□ -0.33
PRKDCP78527 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.97□□□□□ -0.33
PRKDCP78527 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 REXO1L3P-201ENST00000622202 1288 ntBASIC12.97□□□□□ -0.33
PRKDCP78527 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC12.97□□□□□ -0.33
PRKDCP78527 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC12.97□□□□□ -0.33
PRKDCP78527 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 AC074386.1-202ENST00000463561 864 ntBASIC12.97□□□□□ -0.33
PRKDCP78527 SDHAP2-201ENST00000455183 2001 ntBASIC12.97□□□□□ -0.33
PRKDCP78527 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 MIR149-201ENST00000384879 89 ntBASIC12.97□□□□□ -0.33
PRKDCP78527 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.97□□□□□ -0.33
PRKDCP78527 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.97□□□□□ -0.33
PRKDCP78527 IFT20-216ENST00000588477 774 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.97□□□□□ -0.33
PRKDCP78527 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PRKDCP78527 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.97□□□□□ -0.33
PRKDCP78527 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC12.96□□□□□ -0.33
PRKDCP78527 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.96□□□□□ -0.33
PRKDCP78527 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC12.96□□□□□ -0.33
PRKDCP78527 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.96□□□□□ -0.33
PRKDCP78527 AL662799.1-202ENST00000614205 422 ntBASIC12.96□□□□□ -0.33
PRKDCP78527 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.96□□□□□ -0.33
PRKDCP78527 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.96□□□□□ -0.33
PRKDCP78527 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.96□□□□□ -0.33
PRKDCP78527 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.96□□□□□ -0.33
PRKDCP78527 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PRKDCP78527 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
PRKDCP78527 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
PRKDCP78527 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC12.96□□□□□ -0.33
PRKDCP78527 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC12.96□□□□□ -0.33
PRKDCP78527 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC12.96□□□□□ -0.34
PRKDCP78527 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC12.96□□□□□ -0.34
PRKDCP78527 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
PRKDCP78527 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC12.96□□□□□ -0.34
PRKDCP78527 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
PRKDCP78527 AC004790.2-201ENST00000623588 572 ntBASIC12.96□□□□□ -0.34
PRKDCP78527 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms