Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
HDAC4P56524 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.91■□□□□ 0.62
HDAC4P56524 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 LINC01311-201ENST00000565162 1445 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
HDAC4P56524 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
HDAC4P56524 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 FLJ13224-201ENST00000313737 1514 ntBASIC18.9■□□□□ 0.62
HDAC4P56524 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 BCL2-203ENST00000589955 5011 ntBASIC18.9■□□□□ 0.62
HDAC4P56524 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.9■□□□□ 0.62
HDAC4P56524 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.9■□□□□ 0.62
HDAC4P56524 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 MIR662-201ENST00000384847 95 ntBASIC18.9■□□□□ 0.62
HDAC4P56524 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.9■□□□□ 0.62
HDAC4P56524 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.9■□□□□ 0.62
HDAC4P56524 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.9■□□□□ 0.62
HDAC4P56524 AC113404.2-201ENST00000507884 177 ntBASIC18.9■□□□□ 0.62
HDAC4P56524 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.9■□□□□ 0.62
HDAC4P56524 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HDAC4P56524 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.9■□□□□ 0.62
HDAC4P56524 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.9■□□□□ 0.62
HDAC4P56524 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 AC008687.5-201ENST00000593746 558 ntBASIC18.9■□□□□ 0.62
HDAC4P56524 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HDAC4P56524 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.9■□□□□ 0.62
HDAC4P56524 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HDAC4P56524 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.9■□□□□ 0.62
HDAC4P56524 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
HDAC4P56524 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HDAC4P56524 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.9■□□□□ 0.62
HDAC4P56524 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
HDAC4P56524 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HDAC4P56524 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.89■□□□□ 0.62
HDAC4P56524 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HDAC4P56524 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HDAC4P56524 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HDAC4P56524 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
HDAC4P56524 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 AL671277.2-201ENST00000458060 996 ntBASIC18.89■□□□□ 0.61
HDAC4P56524 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.89■□□□□ 0.61
HDAC4P56524 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
HDAC4P56524 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDAC4P56524 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.89■□□□□ 0.61
HDAC4P56524 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.88■□□□□ 0.61
HDAC4P56524 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDAC4P56524 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HDAC4P56524 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.88■□□□□ 0.61
HDAC4P56524 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDAC4P56524 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDAC4P56524 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDAC4P56524 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDAC4P56524 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.88■□□□□ 0.61
HDAC4P56524 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDAC4P56524 LINC01238-205ENST00000567549 1107 ntBASIC18.88■□□□□ 0.61
HDAC4P56524 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.88■□□□□ 0.61
HDAC4P56524 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms