Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 CCR12P-201ENST00000446203 998 ntBASIC16.6■□□□□ 0.25
CDH11P55287 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH11P55287 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH11P55287 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH11P55287 AC116562.4-202ENST00000641738 218 ntBASIC16.6■□□□□ 0.25
CDH11P55287 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
CDH11P55287 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.6■□□□□ 0.25
CDH11P55287 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH11P55287 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH11P55287 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CDH11P55287 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CDH11P55287 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
CDH11P55287 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.59■□□□□ 0.25
CDH11P55287 KRT18P41-201ENST00000518924 1277 ntBASIC16.59■□□□□ 0.25
CDH11P55287 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH11P55287 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.59■□□□□ 0.25
CDH11P55287 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CDH11P55287 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH11P55287 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CDH11P55287 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH11P55287 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH11P55287 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDH11P55287 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDH11P55287 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDH11P55287 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CDH11P55287 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDH11P55287 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.58■□□□□ 0.25
CDH11P55287 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.58■□□□□ 0.25
CDH11P55287 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDH11P55287 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
CDH11P55287 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.58■□□□□ 0.24
CDH11P55287 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CDH11P55287 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
CDH11P55287 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CDH11P55287 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.58■□□□□ 0.24
CDH11P55287 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.58■□□□□ 0.24
CDH11P55287 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
CDH11P55287 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CDH11P55287 FAM87A-204ENST00000613235 858 ntBASIC16.58■□□□□ 0.24
CDH11P55287 AL590326.2-201ENST00000625139 305 ntBASIC16.58■□□□□ 0.24
CDH11P55287 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
CDH11P55287 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.58■□□□□ 0.24
CDH11P55287 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CDH11P55287 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CDH11P55287 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH11P55287 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.58■□□□□ 0.24
CDH11P55287 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms