Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.71■□□□□ 0.59
HMGA1P17096 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 AF186996.4-201ENST00000467186 377 ntBASIC18.71■□□□□ 0.59
HMGA1P17096 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 RNPS1P1-201ENST00000507437 918 ntBASIC18.71■□□□□ 0.59
HMGA1P17096 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGA1P17096 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGA1P17096 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGA1P17096 BX640515.1-201ENST00000617215 977 ntBASIC18.71■□□□□ 0.59
HMGA1P17096 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGA1P17096 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGA1P17096 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGA1P17096 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
HMGA1P17096 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HMGA1P17096 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.7■□□□□ 0.58
HMGA1P17096 AL096828.2-201ENST00000567259 1965 ntBASIC18.7■□□□□ 0.58
HMGA1P17096 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.7■□□□□ 0.58
HMGA1P17096 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGA1P17096 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGA1P17096 FAM220CP-201ENST00000395253 831 ntBASIC18.7■□□□□ 0.58
HMGA1P17096 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.7■□□□□ 0.58
HMGA1P17096 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGA1P17096 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGA1P17096 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.7■□□□□ 0.58
HMGA1P17096 AC010460.3-201ENST00000511359 1579 ntBASIC18.7■□□□□ 0.58
HMGA1P17096 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGA1P17096 AC120498.9-201ENST00000339021 3867 ntBASIC18.7■□□□□ 0.58
HMGA1P17096 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGA1P17096 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGA1P17096 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
HMGA1P17096 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGA1P17096 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGA1P17096 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGA1P17096 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGA1P17096 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGA1P17096 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGA1P17096 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 HNRNPDP1-201ENST00000439535 754 ntBASIC18.69■□□□□ 0.58
HMGA1P17096 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.69■□□□□ 0.58
HMGA1P17096 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.69■□□□□ 0.58
HMGA1P17096 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGA1P17096 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HMGA1P17096 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HMGA1P17096 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGA1P17096 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
HMGA1P17096 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGA1P17096 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGA1P17096 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGA1P17096 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGA1P17096 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGA1P17096 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGA1P17096 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGA1P17096 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms