Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VIMP08670 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.2■□□□□ 0.5
VIMP08670 AL121832.2-201ENST00000610979 668 ntBASIC18.2■□□□□ 0.5
VIMP08670 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.2■□□□□ 0.5
VIMP08670 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.2■□□□□ 0.5
VIMP08670 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.2■□□□□ 0.5
VIMP08670 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VIMP08670 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
VIMP08670 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.2■□□□□ 0.5
VIMP08670 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VIMP08670 PCDH8P1-201ENST00000428983 2773 ntBASIC18.19■□□□□ 0.5
VIMP08670 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 RCC2P3-201ENST00000418112 1537 ntBASIC18.19■□□□□ 0.5
VIMP08670 KRT18P55-202ENST00000578578 1546 ntBASIC18.19■□□□□ 0.5
VIMP08670 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
VIMP08670 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
VIMP08670 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 AL355312.1-201ENST00000407115 2176 ntBASIC18.19■□□□□ 0.5
VIMP08670 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.19■□□□□ 0.5
VIMP08670 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
VIMP08670 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 AC133552.2-202ENST00000575694 574 ntBASIC18.19■□□□□ 0.5
VIMP08670 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.19■□□□□ 0.5
VIMP08670 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VIMP08670 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VIMP08670 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.19■□□□□ 0.5
VIMP08670 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.18■□□□□ 0.5
VIMP08670 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VIMP08670 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.18■□□□□ 0.5
VIMP08670 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.18■□□□□ 0.5
VIMP08670 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.18■□□□□ 0.5
VIMP08670 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.18■□□□□ 0.5
VIMP08670 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 POU5F1P3-201ENST00000428824 1078 ntBASIC18.18■□□□□ 0.5
VIMP08670 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.18■□□□□ 0.5
VIMP08670 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
VIMP08670 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.18■□□□□ 0.5
VIMP08670 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VIMP08670 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.18■□□□□ 0.5
VIMP08670 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.17■□□□□ 0.5
VIMP08670 PCDHB19P-201ENST00000570871 2371 ntBASIC18.17■□□□□ 0.5
VIMP08670 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 CROCCP2-202ENST00000412962 2773 ntBASIC18.17■□□□□ 0.5
VIMP08670 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms