Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.37■□□□□ 0.53
HOXC11O43248 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.37■□□□□ 0.53
HOXC11O43248 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 AL590627.1-203ENST00000421194 1026 ntBASIC18.37■□□□□ 0.53
HOXC11O43248 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 SCARNA2-201ENST00000458748 420 ntBASIC18.37■□□□□ 0.53
HOXC11O43248 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 AC120114.3-201ENST00000611923 658 ntBASIC18.37■□□□□ 0.53
HOXC11O43248 AC148477.8-201ENST00000624298 468 ntBASIC18.37■□□□□ 0.53
HOXC11O43248 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.37■□□□□ 0.53
HOXC11O43248 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 AC097374.2-201ENST00000618617 1306 ntBASIC18.37■□□□□ 0.53
HOXC11O43248 AP005117.1-201ENST00000584346 1413 ntBASIC18.37■□□□□ 0.53
HOXC11O43248 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.37■□□□□ 0.53
HOXC11O43248 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HOXC11O43248 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HOXC11O43248 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.37■□□□□ 0.53
HOXC11O43248 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
HOXC11O43248 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC11O43248 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.36■□□□□ 0.53
HOXC11O43248 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.36■□□□□ 0.53
HOXC11O43248 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
HOXC11O43248 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HOXC11O43248 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC11O43248 AC093010.1-201ENST00000473625 1624 ntBASIC18.36■□□□□ 0.53
HOXC11O43248 AC073648.2-201ENST00000510116 352 ntBASIC18.36■□□□□ 0.53
HOXC11O43248 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.36■□□□□ 0.53
HOXC11O43248 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HOXC11O43248 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.36■□□□□ 0.53
HOXC11O43248 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.36■□□□□ 0.53
HOXC11O43248 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.36■□□□□ 0.53
HOXC11O43248 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
HOXC11O43248 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC11O43248 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC11O43248 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC11O43248 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC11O43248 RNPS1P1-201ENST00000507437 918 ntBASIC18.35■□□□□ 0.53
HOXC11O43248 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.35■□□□□ 0.53
HOXC11O43248 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.35■□□□□ 0.53
HOXC11O43248 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.35■□□□□ 0.53
HOXC11O43248 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC11O43248 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HOXC11O43248 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC11O43248 BX323043.1-201ENST00000641006 1765 ntBASIC18.35■□□□□ 0.53
HOXC11O43248 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 AC098818.2-201ENST00000564925 2320 ntBASIC18.34■□□□□ 0.53
HOXC11O43248 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms