Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGN4O00479 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGN4O00479 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 AC100803.2-201ENST00000562459 1963 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 AC087499.1-201ENST00000418141 1075 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.84■□□□□ 0.29
HMGN4O00479 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 AC008687.5-201ENST00000593746 558 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HMGN4O00479 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 AL138966.2-201ENST00000621997 464 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 AC066615.1-201ENST00000640911 628 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HMGN4O00479 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGN4O00479 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
HMGN4O00479 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 LINC00167-201ENST00000530583 1419 ntBASIC16.84■□□□□ 0.29
HMGN4O00479 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
HMGN4O00479 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HMGN4O00479 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.84■□□□□ 0.29
HMGN4O00479 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGN4O00479 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HMGN4O00479 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.83■□□□□ 0.29
HMGN4O00479 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HMGN4O00479 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HMGN4O00479 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HMGN4O00479 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
HMGN4O00479 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HMGN4O00479 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGN4O00479 GCSHP2-201ENST00000560971 527 ntBASIC16.83■□□□□ 0.28
HMGN4O00479 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGN4O00479 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.83■□□□□ 0.28
HMGN4O00479 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGN4O00479 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGN4O00479 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGN4O00479 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HMGN4O00479 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
HMGN4O00479 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGN4O00479 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGN4O00479 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGN4O00479 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGN4O00479 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HMGN4O00479 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGN4O00479 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HMGN4O00479 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HMGN4O00479 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HMGN4O00479 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGN4O00479 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HMGN4O00479 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGN4O00479 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms