Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DUTP2-201ENST00000519164 463 ntBASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS9D1Q9Y2B5 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 AC022898.2-201ENST00000616822 1312 ntBASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 KRT89P-201ENST00000620027 1478 ntBASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 AC113404.2-201ENST00000507884 177 ntBASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 AC010203.1-204ENST00000548782 407 ntBASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 AL023973.1-201ENST00000624619 620 ntBASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VPS9D1Q9Y2B5 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 TERF1P1-201ENST00000311003 1181 ntBASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 RASA4DP-201ENST00000460726 1199 ntBASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS9D1Q9Y2B5 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS9D1Q9Y2B5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS9D1Q9Y2B5 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS9D1Q9Y2B5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
VPS9D1Q9Y2B5 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VPS9D1Q9Y2B5 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS9D1Q9Y2B5 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 AC026471.1-201ENST00000564629 3026 ntBASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 FAM8A6P-201ENST00000407496 1135 ntBASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 LINC01023-201ENST00000606054 436 ntBASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms